PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GG6CV
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 452aa    MW: 49862.6 Da    PI: 9.5972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GG6CVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-055474323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C+ Cgk F r  nL+ H r H
  Aradu.GG6CV 54 CETCGKGFQRDQNLQLHRRGH 74
                 *******************88 PP

2zf-C2H2120.00062128150123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H + +
  Aradu.GG6CV 128 WKCDKCSKRYAVQSDWKAHSKIC 150
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.5935274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-55274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.03E-75274No hitNo description
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.03E-7123148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MRILENMDHG ELSNGFPHNQ NQNPTTTPPP SSNNNLPSLK RKRNLPGNPG KFLCETCGKG  60
FQRDQNLQLH RRGHNLPWKL KQRTNKEPKK RVYVCPEKTC VHNHPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA  180
EETARVNAAS SINNSTLGAN NSNNNIIGYN NMMIGTSMAP HHNNNNNMAT QFASICNKPI  240
PFPEEARNNQ TTTRGLSLWM DHHHHHRQEA TMATNNNNYH LNWVFGSKIS TNPSQDLSSN  300
TTITSTTTTS LSVPSLYSSQ HQPHQTCASS SSANMSATAL LQKAAQVGAT SCGPSSFLGA  360
LGLKCSNGSG QGQDGNNNKF CGVYGSSLVL TSSSNNINTE PENNELSQML PSKRRHVMPN  420
EESGGGQTRD FLGVGGANHH LPPFINQSLD LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932897.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-121IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLI1LS810.0I1LS81_SOYBN; Uncharacterized protein
STRINGGLYMA12G13810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-100C2H2-like zinc finger protein